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Journal: Nature Chemical Biology
Article Title: Programmable RNA N6-methyladenosine editing by CRISPR-Cas9 conjugates
doi: 10.1038/s41589-019-0327-1
Figure Lengend Snippet: Fig. 1 | Targeted 5′ UTR methylation by engineered m6A ‘writers’ a, Schematic of engineered m6A ‘writers’ by coupling CRISPR-dCas9 with single-chain methyltransferase domains derived from METTL3 (green) and METTL14 (brown). The sgRNA and PAMmer are base-paired to nearby regions of the m6A consensus motif on target RNA. PAMer supplies the PAM sequence NGG that does not need to be present on target RNA. b, Measurement of m6A levels on Hspa1a 5′ UTR-Luc in transfected HeLa cells. λ2 sgRNA was used as the non-targeting control. Primers were designed to span the targeting m6A site A103 in Hspa1a 5′ UTR or A1280 of Fluc mRNA as control for off-targeting. Error bars, mean ± s.e.m.; unpaired Student’s t-test, *P < 0.05, **P < 0.01; n = 4 independent experiments. c, Site-specific detection of m6A on Hspa1a 5′ UTR-Luc in transfected HeLa cells using fluorescein-dUTP-incorporated primer-extension approach. Both specific (A103) and non-specific (A1280) sites were detected from the same sample. Red boxes highlight decreased probe +1 signals as a result of increased methylation by M3M14-dCas9 but not the inactive mutant. This experiment was repeated twice with similar results. Uncropped scans are shown in Supplementary Fig. 11. d, Measurement of m6A levels on endogenous Hsph1 5′ UTR in MEF cells transfected with engineered m6A ‘writers’. λ2 sgRNA was used as the non-targeting control. Error bars, mean ± s.e.m.; unpaired Student’s t-test, *P < 0.05; n = 4 independent experiments.
Article Snippet: DNA sequences encoding methytransferase domain of
Techniques: Methylation, CRISPR, Derivative Assay, Sequencing, Transfection, Control, Mutagenesis